ImageCLEFmed 2007 Data

Last updated - 25 May 2007, William Hersh

The data for the ImageCLEFmed 2007 task is available in the protected area of the Web site as described in the email sent to participants. Note that usage of mypacs.net data requires completing a separate license agreement and sending it to Henning Müller.

Some files were updated and/or had their names changed on or before 25 May 2007:
The directory for the data contains the following files in the /iclefmed directory:
CASImage.tar		25-Jan-2006 19:08 	1.3G
DataCheck.java 06-Feb-2006 12:34 1.1K
Imageclefmed.xml 01-Apr-2006 14:26 19M
Imageclefmed2007.xml 15-May-2007 12:08 23M
Imageclefmed2007old.xml 26-Mar-2007 18:13 23M
MIR.tar 25-Jan-2006 19:08 63M
PathoPic.tar 25-Jan-2006 19:09 879M
Peir.tar 01-Apr-2006 12:56 2.5G
Peir.tar_aa 01-Apr-2006 13:03 954M
Peir.tar_ab 01-Apr-2006 13:04 954M
Peir.tar_ac 01-Apr-2006 13:05 651M
README2006 01-Apr-2006 14:09 2.4K
README2007 15-May-2007 12:35 3.3K
baseline06.text.txt 07-Jun-2006 07:13 23M
baseline06.visual.txt 07-Jun-2006 07:13 1.3M
baseline07.FIRE.gz 25-May-2007 05:41 276K
endoscopic.tar 15-May-2007 13:24 33M
iclefmed2005images.zip 27-Dec-2006 09:21 2.8M
iclefmed2005topics.doc 27-Dec-2006 09:21 176K
iclefmed2005topics.txt 27-Dec-2006 09:21 4.9K
iclefmed2006images.zip 27-Dec-2006 09:21 6.7M
iclefmed2006topics.doc 27-Dec-2006 09:21 7.0M
iclefmed2006topics.txt 27-Dec-2006 09:21 4.8K
iclefmed2007images.zip 15-May-2007 16:26 2.8M
iclefmed2007topics.txt 16-May-2007 17:19 3.1K
iclefmed2007topics.xml 16-May-2007 18:13 6.2K
icm05.qrels.lenient.txt 27-Dec-2006 09:24 620K
icm05.qrels.txt 27-Dec-2006 09:22 620K
icm06.qrels.txt 28-Jul-2006 05:57 783K
topic#conversion.txt 27-Dec-2006 09:59 234
updatePeir.java 01-Apr-2006 13:07 858
And this file in the iclefmed2 directory:
mypacs.tar		31-Mar-2007 07:00	390M
The README files describes how to extract the collection from the .tar files. Here is a description of the files:
Here is more detail of the corrections to the 2007 images: MyPACS case 258423 had 5 0kb images: mp_258441, mp_258443, mp_258445, mp_258447, mp_258449. MyPACS case 317190 had 2 0kb images: mp_317190 and mp_317192. As these files were also malformed in our source, they were removed from myPACS/images/. References to these images were removed from the cases MP_258423.xml and MP_111310.xml, as well as Imageclef2007.xml. Initially, collections/endospic/IMAGES/155000029461.jpg was also 0kb. However, it was replaced with the correct image. The updates have been noted in README2007.

Organisers

Henning Müller, University and Hospitals of Geneva, Geneva, Switzerland Email: henning.mueller@sim.hcuge.ch
Web: http://www.sim.hcuge.ch/medgift/02_Henning_EN.htm
Paul Clough, Sheffield University, Sheffield, England
Email: p.d.clough@sheffield.ac.uk
Web: http://ir.shef.ac.uk/cloughie/
William Hersh, Oregon Health &Science University (OHSU), Portland, OR, USA Email: hersh@ohsu.edu
Web: http://www.billhersh.info/
Jayashree Kalpathy-Cramer, Oregon Health &Science University (OHSU), Portland, OR, USA Email: kalpathy@ohsu.edu